Basics of biomaterial modelling using the molecular dynamics method Field of study: Biomedical Engineering
Programme code: W4-S1IB19.2023

Module name: Basics of biomaterial modelling using the molecular dynamics method
Module code: 08-IBIB-S1-17-5-PMBM
Programme code: W4-S1IB19.2023
Semester: winter semester 2025/2026
Language of instruction: Polish
Form of verification: exam
ECTS credits: 5
Purpose and description of the content of education:
Moduł "Podstawy modelowania biomateriałów metodą dynamiki molekularnej" ma umożliwić studentowi/studentce poznanie zagadnień praktycznego wykorzystania klasycznej dynamiki molekularnej do symulacji zjawisk i procesów w materiałach do zastosowań biomedycznych. Dzięki temu student/studentka powinna rozumieć znaczenie eksperymentu komputerowego nie tylko w opisie właściwości fizyko-chemicznych biomateriałów, ale również w projektowaniu nowych biomateriałów inżynierskich do zastosowań technicznych i medycznych. Realizacja powyższych celów będzie wymagała poznania podstaw matematyczno-fizycznych metody dynamiki molekularnej oraz oraz jej ograniczeń. Moduł umożliwi również nabycie praktycznych umiejętności w zakresie projektowanie algorytmów oraz tworzenia programów w środowisku wybranego pakietu programowego dedykowanego do symulacji metodą klasycznej dynamiki molekularnej.
List of modules that must be completed before starting this module (if necessary): not applicable
Learning outcome of the module Codes of the learning outcomes of the programme to which the learning outcome of the module is related [level of competence: scale 1-5]
Wiedza z zakresu podstaw matematycznych i fizycznych metody klasycznej dynamiki molekularnej [K_1]
 W01 [3/5] W03 [2/5] W06 [1/5]
Znajomość zasad projektowania algorytmów symulacji komputerowych metodą klasycznej dynamiki molekularnej [K_2]
 W13 [2/5]
Umiejętność analizy zagadnienia inżynierskiego, doboru właściwego algorytmu oraz projektowania programów do symulacji wybranych zjawisk i procesów fizykochemicznych oraz właściwości biomateriałów metodą dynamiki molekularnej [K_3]
 U01 [3/5] U10 [2/5]
Umiejętność opracowania dokumentacji dotyczącej realizacji symulacji oraz zawierającej omówienie jej wyników [K_4]
 U03 [3/5]
Odpowiedzialność za pracę własną oraz umiejętność określania priorytetów i podziału zadania w pracy zespołowej [K_5]
 K03 [3/5]
Form of teaching Number of hours Methods of conducting classes Assessment of the learning outcomes Learning outcomes
lecture [k_fs_1] 15 Formal lecture/ course-related lecture [a01]  exam K_1 K_2 K_3 K_4 K_5
laboratory classes [k_fs_2] 30 Explanation/clarification [a05] 
Demonstration-imitation [c06] 
Working with a computer [d01]  		course work K_1 K_2 K_3 K_4 K_5
The student's work, apart from participation in classes, includes in particular:
Name Category Description
Search for materials and review activities necessary for class participation [a01] Preparation for classes
reviewing literature, documentation, tools and materials as well as the specifics of the syllabus and the range of activities indicated in it as required for full participation in classes
Literature reading / analysis of source materials [a02] Preparation for classes
reading the literature indicated in the syllabus; reviewing, organizing, analyzing and selecting source materials to be used in class
Developing practical skills [a03] Preparation for classes
activities involving the repetition, refinement and consolidation of practical skills, including those developed during previous classes or new skills necessary for the implementation of subsequent elements of the curriculum (as preparation for class participation)
Production/preparation of tools, materials or documentation necessary for class participation [a05] Preparation for classes
developing, preparing and assessing the usefulness of tools and materials (e.g. aids, scenarios, research tools, equipment, etc.) to be employed in class or as an aid when preparing for classes
Getting acquainted with the syllabus content [b01] Consulting the curriculum and the organization of classes
reading through the syllabus and getting acquainted with its content
Studying the literature used in and the materials produced in class [c02] Preparation for verification of learning outcomes
exploring the studied content, inquiring, considering, assimilating, interpreting it, or organizing knowledge obtained from the literature, documentation, instructions, scenarios, etc., used in class as well as from the notes or other materials/artifacts made in class
Analysis of the corrective feedback provided by the academic teacher on the results of the verification of learning outcomes [d01] Consulting the results of the verification of learning outcomes
reading through the academic teacher’s comments, assessments and opinions on the implementation of the task aimed at checking the level of the achieved learning outcomes
Development of a corrective action plan as well as supplementary/corrective tasks [d02] Consulting the results of the verification of learning outcomes
reviewing and selecting tasks and activities enabling the elimination of errors indicated by the academic teacher, their verification or correction resulting in completing the task with at least the minimum passing grade
Attachments
Module description (PDF)
Information concerning module syllabuses might be changed during studies.
Syllabuses (USOSweb)
Semester Module Language of instruction
(no information given)